miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|21371202|gb|BQ512333.1|BQ512333 AACAGCAAAATTCAAAGGGAGAGCTATGGTTAATCATTTACAACAAATCTGGACTTGCGTTGTCATCCAACAATGGATGT
CAAGAATAAAGGTAATACAGAATGTTCACTCTAATACTCCACTCAACATATATGTATATATACCTGAATAACTCCCTGAC
TTAGAGAACAAGAACAAAATCATACACTTATTCAGGAAGAACGAACCTGTAAACTAAACAAATGCTTGCTCGCTGTATTT
CAGGAATTAGGAGAAATATGTGCAGAGAACACTTCATGAACCACCCAATTTGTTGATATTACACTCTCGCAAAAATGCCT
GATCATAGTCAACAAATTTTGACCAGTAGTCCCGGAACTTGGGTATGCTTATTTCAAGCCATGGTTTCAAGTTCCCATTG
TAATGTATGACTGCTGCTCGTTGAATGTCCTTCTGGCTAACATTTGGATTGTAGCCAAGCCCAAGGACATGCCATGATCG
GTCGAGGGCATATGTGCGCTTCCAAAAGGTTATCAAACCAGGTGGTAGGGTCCCCAACTTCCAAAGTTGTCTTTCATGAT
TCCGATTTTGCCATGAGTGGTACACCTCTGTGATGTTTTGCCGCCTCCACTCATTTAGATCAATGATGTTCATTCCAAAT
GCCCAACCACAAGCACGAGGATCAAAATTTTTAGAGATCAGAGGATTTGAGAAGTTGAGGTAGCGGTCAAACCGATGAAA
GCTTTCTCCACAGGTTTCAACCACACCAATCACCTTACCCTTAAGATCAAGTGACCAAAGG




Most similar to sp|Q93ZX7|GAUT4_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q93ZX7|GAUT4_ARATH Probable galacturonosyltransferase 4
           OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1
          Length = 616

 Score =  304 bits (779), Expect = 4e-82
 Identities = 130/163 (79%), Positives = 149/163 (91%)
 Frame = -2

Query: 780 LWSLDLKGKVIGVVETCGESFHRFDRYLNFSNPLISKNFDPRACGWAFGMNIIDLNEWRR 601
           LWS+DLKG V G VETCGESFHRFDRYLNFSNPLISKNFDPRACGWA+GMN+ DL+EW+R
Sbjct: 453 LWSVDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPRACGWAYGMNVFDLDEWKR 512

Query: 600 QNITEVYHSWQNRNHERQLWKLGTLPPGLITFWKRTYALDRSWHVLGLGYNPNVSQKDIQ 421
           QNITEVYH WQ+ N +R+LWKLGTLPPGLITFW+RTY LDR WH+LGLGYNP+V+Q+DI+
Sbjct: 513 QNITEVYHRWQDLNQDRELWKLGTLPPGLITFWRRTYPLDRKWHILGLGYNPSVNQRDIE 572

Query: 420 RAAVIHYNGNLKPWLEISIPKFRDYWSKFVDYDQAFLRECNIN 292
           RAAVIHYNGNLKPWLEI IP++R +WSK VDY+  +LRECNIN
Sbjct: 573 RAAVIHYNGNLKPWLEIGIPRYRGFWSKHVDYEHVYLRECNIN 615